4.4. curp graph-een

Warning

This command is not supported in CURP 3.0. Please use the previous version of CURP for this command.

curp graph-een [-h] [-t [TARGETS [TARGETS ...]]]
               [--forced-output-nodes [FORCE_NODES [FORCE_NODES ...]]]
               [-p [CLOSE_PAIRS [CLOSE_PAIRS ...]]] [-c CLUSTER_FN]
               [-n NODE_FN] [--with-one-letter] [-f FIG_FN]
               [-r THRESHOLD] [-R TPL_THRESHOLD] [--ratio RATIO]
               [-s GRAPH_SIZE] [--title TITLE] [--direction {LR,TB}]
               [-I] [--show-negative-values] [--alpha ALPHA]
               [-lv [LINE_VALUES [LINE_VALUES ...]]]
               [-lc [LINE_COLORS [LINE_COLORS ...]]]
               [-lt [LINE_THICKS [LINE_THICKS ...]]]
               [-lw [LINE_WEIGHTS [LINE_WEIGHTS ...]]]
               data_fns [data_fns ...]

Show network chart of the energy conductivities.

4.4.1. Positional arguments

data_fns

Specify filenames.

4.4.2. Options

-h, –help

Show this help message and exit.

-t [TARGETS [TARGETS …]], –targets [TARGETS [TARGETS …]] (defalut: 1-)

This option allow you to show only target and thier neighbhor nodes. ex), [-t 1-5], [-t 2-9 15 17], [-t 25-].

–forced-output-nodes [FORCE_NODES [FORCE_NODES …]] defalut: [])

nodes to forcibly show. ex), [-t 1-5], [-t 2-9 15 17], [-t 25-].

-p [CLOSE_PAIRS [CLOSE_PAIRS …]], –bring-node-pair-close-together [CLOSE_PAIRS [CLOSE_PAIRS …]] (defalut: [])

bring the node pair close together on the EEN graph. ex), 1:2, 3:5, 3:15.

-c CLUSTER_FN, –cluster-filename CLUSTER_FN (defalut: None)

Specify a cluster file name.

-n NODE_FN, –node-style-filename NODE_FN (defalut: None)

Specify a file name which node style difinitions are written.

–with-one-letter (defalut: False)

use 1 letter representation for amino acid name.

-f FIG_FN, –output-een-filename FIG_FN

Specify a filename to graph EEN.

-r THRESHOLD, –threshold THRESHOLD (type: float, defalut: False)

Threshold value to show nodes on chart figure.

-R TPL_THRESHOLD, –topology-threshold TPL_THRESHOLD (type: float, defalut: None)

Threshold value to define graph topology. If you don’t give this parameter, the value of threshold to show nodes will be used.

–ratio RATIO (type: float, defalut: None)

Ratio of height/width to chart a figure. If ‘–graph-size’ is set, this option will be overwritten by it.

-s GRAPH_SIZE, –graph-size GRAPH_SIZE (defalut: None)

The graph size in inch unit. ex) -s ‘3.4,2.5’

–title TITLE (defalut: None)

Specify the title of the figure.

–direction {LR,TB} (defalut: TB)

Specify the kind of the direction.

-I, –hide-isolated-nodes

Hide isolated nodes when appling multiple irEC files.

–show-negative-values

show the nodes pair which have negative values.

–alpha ALPHA (type: int, defalut: None)

The transparency value of the background color.

-lv [LINE_VALUES [LINE_VALUES …]], –line-values [LINE_VALUES [LINE_VALUES …]] (type: float, default: [0.015, 0.008, 0.003])

The threshold values for line attributes. Number of elements in the list must be equal with all line attribute.

-lc [LINE_COLORS [LINE_COLORS …]], –line-colors [LINE_COLORS [LINE_COLORS …]] (type: str, default: [‘red’, ‘blue’, ‘green’])

The colors of line. Number of elements in the list must be equal with all line attribute.

-lt [LINE_THICKS [LINE_THICKS …]], –line-thicks [LINE_THICKS [LINE_THICKS …]] (type: float, default: [4.0, 4.0, 2.5])

The thickness of line. Number of elements in the list must be equal with all line attribute.

-lw [LINE_WEIGHTS [LINE_WEIGHTS …]], –line-weights [LINE_WEIGHTS [LINE_WEIGHTS …]] (type: float, default: [5.0, 3.0, 1.0])

The weight of line. Number of elements in the list must be equal with all line attribute.